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Current Topics Workshop: MicroRNA in Development and Cancer
(April 12-13, 2007)

Partially supported by the College of Medicine

Organizers: Carlo Croce, Avner Friedman, George Calin, and Shili Lin

The microRNAs (miRNAs) are small non-coding RNAs that regulate the expression of protein-coding genes. Alterations of miRNA genes have been detected in many human tumors. MicroRNAs expression profiling has been exploited to identify miRNAs that are potentially involved in the pathogenesis of human cancers. Profiling has been allowed the definitions of signatures associated with diagnosis, staging, and progression and response to treatment of human tumors. In addition, profiling has been exploited to identify microRNAs genes that are downstream targets of activated oncogenic pathways or that are targeting protein coding genes involved in cancer.

Identification of miRNA targets is an overarching theme in the research of microRNAs. Normal random variation in sequence complementarity requires assessment of the strengths of putative targets. Experimentally validated and excluded targets are valuable for building machine learning tools for systematic target prediction and filtering. Such issues, among many others, are challenging yet provide great opportunities for statistical and bioinformatical research. Thus, one of the goals of this workshop is to bring interested statisticians to interact with biologists, the majority of the invited speakers, to tackle such, and many other problems in microRNA research.

Schedule

Thursday, April 12
General MicroRNA
8:00-8:30am Continental breakfast
8:30-8:45am Introduction by Avner Friedman and Carlo Croce
8:45-9:20am Victor Ambros: MicroRNAs in Animal Development
9:20-9:55am Phillip Sharp: The roles of short RNAs in cell biology
9:55-10:15am Coffee break
10:15-10:50am Carlo Croce
10:50-11:25am Amy Pasquinelli: Regulation of Gene Expression by MicroRNAs
11:25-12:00pm Frank Slack: Conserved microRNAs with novel functions
12:00-12:35pm Joshua Mendell: Dynamic Regulation of miRNA expression during the cell cycle and in cancer
12:35-1:35pm Lunch
Bioinformatics
1:35-2:10pm Darlene Goldstein: MicroRNA microarrays - difficulties in quantifying expression
2:10-2:45pm Shane Jensen: Statistical Issues in microRNA Promoter Element Discovery
2:45-3:05pm Coffee break
3:05-3:40pm Michael Schimek: Random degeneration testing of rank information for microRNA target selection
3:40-4:15pm Artemis Hatzigeorgiou: Computational/experimental approaches for microRNA biogenesis and function
4:15-4:35pm Coffee break
4:35-5:10pm Isidore Rigoutsos: Revisiting the Topics of MicroRNA Target Detection and MicroRNA Precursor Discovery
5:10-5:40pm Discussion
6:30-7:30pm Cash bar at the Holiday Inn on the Lane
7:30-9:00pm Dinner at the Holiday Inn on the Lane
Friday, April 13
Cancer
8:00-8:30am Continental breakfast
8:30-9:05am Michael McManus
9:05-9:40am Zissimos Mourelatos
9:40-10:10am Coffee break
10:10-10:45am Kenneth Kosik
10:45-11:20am Thomas Schmittgen: Real-time PCR profiling of miRNA in human cancer
11:20-12:20pm Lunch
12:20-12:55pm Marc Rehmsmeier: RNAhybrid: statistically controlled prediction of microRNA targets
12:55-1:30pm Mike Thomson: Regulation of microRNA processing and its implications for development and cancer
1:30-2:05pm Mark Boldin: MicroRNAs induced by inflammatory and infectious stimuli
2:05-2:35pm Coffee break
2:35-3:10pm Paul Blower: The Role of microRNAs in Chemoresistance
3:10-3:45pm George Calin
3:45-4:05pm Discussion