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Workshop 1: Network Biology: Understanding metabolic and protein interactions: Schedule

Schedule
Monday, September 14
8:00am Shuttle leaves for MBI
8:45-9:00am Welcome, overview of workshop, and introductions: Marty Golubitsky, Laszlo Barabasi, and Eivind Almaas
9:00-10:00am Reka Albert: Tutorial: Graph concepts and applications to protein interaction networks
10:00-10:30am Break
10:30-11:30am Ali Navid: System level analysis of cellular metabolism using constraint-based methods
11:30-1:30pm Lunch break
1:30-2:30pm Mark Gerstein: Understanding Protein Function on a Genome-scale using Networks
2:30-3:00pm Break
3:00-4:00pm Eugene Shakhnovich: Origins and Evolution of Protein Universe: a Network View
4:30pm Reception & Poster session
6:30pm Shuttle pick-up from MBI
Tuesday, September 15
8:00am Shuttle leaves for MBI
9:00-10:00am Reka Albert: Synthesis and causal analysis of signal transduction networks
10:00-10:30am Break
10:30-11:30am Gurol Suel: Dissecting the Functional Importance of Gene Circuit Architecture
11:30-1:30pm Lunch break
1:30-2:30pm Eytan Ruppin: Towards Large Scale in Silico Modeling of Human Metabolism
2:30-3:00pm Break
3:00-4:00pm Gregory Stephanopoulos: Metabolic flux: Key indicator of cell physiology and determinant of cell and metabolic engineering
4:00-5:00pm Poster Session
5:15pm Shuttle pick-up from MBI
Wednesday, September 16
8:00am Shuttle leaves for MBI
9:00-10:00am John Quackenbush: Network and State Space Models: Science and Science Fiction Approaches to Cell Fate Predictions
10:00-10:30am Break
10:30-11:30am Jason Papin: Integrative analysis of metabolic and transcriptional regulatory networks for human pathogens
11:30-1:30pm Lunch break
1:30-2:30pm Eivind Almaas: Insights from large-scale protein structure network on the evolution of protein function
2:30-3:00pm Break
3:00-4:00pm Jorg Stelling: Systems analysis of cellular networks under uncertainty
4:00-5:00pm Contributed talks ( Two 20-minute talks + 10-minute Q&A):
- Peter Csermely: Changing of protein-protein interaction network modules in crisis and recovery: the role of creative elements
- Stephan Schuster: Can sugars be produced from fatty acids? Elementary flux mode analysis of metabolic networks
5:15pm Shuttle pick-up from MBI
Thursday, September 17
8:00am Shuttle leaves for MBI
9:00-10:00am Nevan Krogan: Functional Insights from Protein-Protein and Genetic Interaction Maps
10:00-10:30am Break
10:30-11:30am Marc Vidal: Interactome networks and human disease
11:30-1:30pm Lunch break
1:30-2:30pm Laszlo Barabasi: Network Medicine: From the Human Diseasome to Comorbidity Patterns
2:30-3:00pm Break
3:00-4:00pm Alexei Vazquez: Impact of the solvent capacity constraint on cell metabolism
4:00-5:00pm Contributed talks ( Two 20-minute talks + 10-minute Q&A)
- Balazs Papp: Systems biology of genetic interactions in yeast metabolism
- Dan Siegal-Gaskins: The capacity for multistability in small networks
5:15pm Shuttle pick-up from MBI
6:00pm Cash Bar
7:00pm Banquet
Friday, September 18
8:00am Shuttle leaves for MBI
9:00-10:00am Chad Myers: The global landscape of genetic interactions in yeast
10:00-10:30am Break
10:30-11:30am Allen Holder: Computational Biology from an Operations Research Perspective
11:30-12:00pm Conclusion
12:15pm Shuttle pick-up from MBI