Workshop 4: Inference in Stochastic Models of Sequence Evolution: Schedule
Schedule |
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| Monday, February 22 Human Diversity and Populations |
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| 12:15pm | Shuttle leaves for MBI | ||
| 12:45-1:00pm | Welcome, overview of workshop, and introductions: Marty Golubitsky | ||
| 1:00-2:00pm | Graham Coop: Parallel mutations and partial sweeps | ||
| 2:00-2:30pm | Coffee break | ||
| 2:30-3:15pm | Thomas Mailund | ||
| 3:15-3:30pm | Coffee break | ||
| 3:30-4:30pm | Mikkel Schierup: Coalescent HMMs for inference of population genetics processes in ancestral species | ||
| 4:30-6:00pm | Reception in the MBI Lounge | ||
| 6:30pm | Shuttle pick-up from MBI | ||
| Tuesday, February 23 Evolutionary Models |
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| 8:00am | Shuttle leaves for MBI | ||
| 8:30-9:30am | Breakfast | ||
| 9:30-10:15am | Asger Hobolth: Efficient calculation of various summary statistics for end-point conditioned continuous-time Markov chains | ||
| 10:15-11:00am | Michael Lassig: Molecular Fitness Land and Seascapes | ||
| 11:00-11:15am | Coffee break | ||
| 11:15-12:00pm | Carolin Kosiol: Using empirical codon models to understand the patterns and pressures of natural variation reflected in genomic re-sequencing data | ||
| 12:00-1:00pm | Lunch break | ||
| 1:00-2:00pm | Ana Arribas-Gil: Parameter estimation in models for sequence alignment | ||
| 2:00-2:30pm | Coffee break | ||
| 2:30-3:15pm | Kees Albers: A Bayesian method for genome-wide identification of small insertions and deletions | ||
| 3:15-4:00pm | Abdoulaye Diallo: Interence of Insertions and Deletions for Ancestral Genome Reconstruction and Phylogenetics Analyses | ||
| 4:30pm | Shuttle pick-up from MBI | ||
| Wednesday, February 24 Transposons, Viruses and Pathogens |
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| 8:00am | Shuttle leaves for MBI | ||
| 8:30-9:30am | Breakfast | ||
| 9:30-10:30am | Matthew Hahn: Models for Gene Gain, Gene Loss, and Gene Movement | ||
| 10:30-11:00am | Coffee break | ||
| 11:00-12:00pm | Marc Suchard: Many-Core Algorithms for Statistical Phylogenetics | ||
| 12:00-1:00pm | Lunch break | ||
| 1:00-2:00pm | Cedric Feschotte: Transposable elements: germline invaders with a lasting impact on genome evolution | ||
| 2:00-2:30pm | Coffee break | ||
| 2:30-3:30pm | Daniel Falush: Inference of population structure using dense genotype data | ||
| 4:00pm | Shuttle pick-up from MBI | ||
| Thursday, February 25 Comparative Genomics |
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| 8:00am | Shuttle leaves for MBI | ||
| 8:30-9:30am | Breakfast | ||
| 9:30-10:30am | Anna Kedzierska: Model fitting for mixture models | ||
| 10:30-11:00am | Coffee break | ||
| 11:00-12:00pm | Adam Siepel: Estimation of ancestral population divergence times and effective population sizes from complete human genome sequences | ||
| 12:00-1:00pm | Lunch break | ||
| 1:00-2:00pm | Katie Pollard: Accelerated and biased nucleotide evolution in the human genome | ||
| 2:00-2:30pm | Coffee break | ||
| 2:30-3:30pm | Matt Rasmussen: Bayesian Gene-tree Reconstruction and Learning in Phylogenomics | ||
| 4:00pm | Shuttle pick-up from MBI | ||
| 6:00-7:00pm | Cash Bar | ||
| 7:00pm | Banquet in the Fusion Room @ Crowne Plaza Hotel | ||
| Friday, February 26 Paleogenetics and Reconstruction |
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| 8:00am | Shuttle leaves for MBI | ||
| 8:30-9:30am | Breakfast | ||
| 9:30-10:30am | Robin Gutell: Independence and dependence of the nucleotide positions in the Evolution of ribosomal RNA structure | ||
| 10:30-11:00am | Coffee break | ||
| 11:00-12:00pm | David Liberles: Models for Amino Acid Substitution and Gene Duplication With Roots in Molecular and Evolutionary Processes | ||
| 12:00-1:00pm | Lunch break | ||
| 1:00-2:00pm | Stephen Chamberlin: Extracting useful information from protein sequences | ||
| 2:30pm | Shuttle pick-up from MBI | ||
