Workshop 1: Mathematical Modeling of Plant Development: Schedule
Schedule |
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| Monday, September 27 | |||
| Why are we making models? | |||
| 8:00am | Shuttle leaves for MBI | ||
| 8:30-9:15am | Breakfast | ||
| 9:15-9:30am | Welcome from MBI: Marty Golubitsky | ||
| 9:30-9:45am | Welcome from organizers: Vincent Gutschick, Karine Chenu, Michael Chelle, and Hamlyn G. Jones | ||
| Chairman: Vince Gutschick | |||
| 9:45-10:20am | Evelyne Costes: Modelling tree development : overview of open questions specific to fruit species | ||
| 10:20-11:00am | Thierry Simonneau: Combining multiple modeling approaches to design plant ideotypes for specific climates | ||
| 11:00-11:30am | Break | ||
| 11:30-12:30pm | Group discussion: What model for which purpose? Leader: Tom Vogelmann & Hamlyn Jones |
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| 12:30-2:00pm | Lunch break and Poster Session: Eric Casella: Forest canopy gap fraction from terrestrial laser scanning: trade-off between speed and quality |
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| Chairman: Eric Casella | |||
| 2:00-2:30pm | Michael Chelle: At which scale modeling plant-climate-pathogen interactions to find new levers in pest management? - Phylloclimate a key variable to study interactions? | ||
| 2:30-3:00pm | Abraham Escobar-Gutierrez: Simulating grasses morphogenesis with a [self-organisation]-based cybernetic framework | ||
| 3:00-3:30pm | Christine Beveridge: Strigolactones and long-distance polar auxin transport | ||
| 3:30-4:00pm | Break | ||
| 4:00-5:00pm | Report of group discussion and common discussion. Leader: Tom Vogelmann and Hamlyn G. Jones |
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| 5:00-7:00pm | Reception in MBI Lounge | ||
| 7:00pm | Shuttle pick-up from MBI | ||
| Tuesday, September 28 | |||
| Modeling the impact of the ultimate drivers - Genes, biochemistry, environment effect 1/2 | |||
| 8:00am | Shuttle leaves for MBI | ||
| 8:30-9:15am | Breakfast | ||
| Chairman: Wendy Silk | |||
| 9:15-10:00am | Jan Vos: Functional-structural plant modelling: a new versatile tool in crop science | ||
| 10:00-10:45am | Karine Chenu: Functional whole plant modelling: the missing link between molecular biology and crop improvement? | ||
| 10:45-11:15am | Break | ||
| 11:15-12:15pm | Group discussion: Role that may play plant models by linking the huge data flow from -omics to agricultural and ecological questions and problems? Leader: Xavier Draye & Evelyne Costes |
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| 12:15-2:00pm | Lunch break | ||
| Chairman: Abraham Escobar-Gutierrez | |||
| 2:00-2:30pm | Ted DeJong: Using functional-structural plant modeling to study, understand and simulate fruit tree physiology, architecture, growth and production responses to changes in genetics, environment and management | ||
| 2:30-3:00pm | Veronique Letort: Simplifying modeling asumptions in the GreenLab models and methods for parameter identification for trees | ||
| 3:00-3:30pm | John Sperry: Using models of plant hydraulic function to predict gas exchange, growth, and survival in response to environment and ontogeny | ||
| 3:30-4:00pm | Break | ||
| 4:00-5:00pm | Report of group discussion and common discussion. Leaders: Xavier Draye & Evelyne Costes |
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| 5:30pm | Shuttle pick-up from MBI | ||
| Wednesday, September 29 | |||
| Modeling the impact of the ultimate drivers - Genes, biochemistry, environment effect 2/2 | |||
| 8:00am | Shuttle leaves for MBI | ||
| 8:30-9:15am | Breakfast | ||
| Chairman: Christine Beveridge | |||
| 9:15-10:00am | Wendy Silk: Growth kinematics to understand gene functioning for adaptation to a changing environment | ||
| 10:00-10:45am | Xavier Draye: Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils | ||
| 10:45-11:15am | Break | ||
| 11:15-12:15pm | Demonstration: Greg McLean and Karine Chenu | ||
| 12:15-2:00pm | Lunch break | ||
| Implications at Higher Levels Such as Ecology Chairman: Michael Chelle |
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| 2:00-2:45pm | Matt Disney: Leaf to forest: 3D modelling for quantifying and understanding radiation interactions in vegetation | ||
| 2:45-3:30pm | Hamlyn Jones | ||
| 3:30-4:00pm | Break | ||
| 4:00-5:00pm | Discussion leaders: Ilya Ioslovich and Eric Casella | ||
| 5:30pm | Shuttle pick-up from MBI | ||
| Thursday, September 30 | |||
| How do we analyse the results? image analysis, optimisation, inverse modelling | |||
| 8:00am | Shuttle leaves for MBI | ||
| 8:30-9:15am | Breakfast | ||
| Chairman: Thierry Simonneau | |||
| 9:15-10:00am | Jan Kozlowski: Allocation dilemmas in plants | ||
| 10:00-10:45am | Ullo Niinemets: Optimal acclimation of leaf photosynthetic capacity to light: finding appropriate constraints | ||
| 10:45-11:15am | Break | ||
| 11:15-12:15pm | Group discussion: Development of shared database, and modeling platforms such as OpenAlea for FSPMs and grid computing. Advantage, inconvenient, feasibility, constraint? Leaders: Phillip Lewis and Jean-Christophe Soulie |
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| 12:15-2:00pm | Lunch break | ||
| Chairman: Hamlyn Jones | |||
| 2:00-2:30pm | Ilya Ioslovich: Optimal Control of Dynamical Biological System: Simplified Model of Balanced Growth and Development | ||
| 2:30-3:00pm | Mengzhen Kang: Optimization in plant model and computational intelligence | ||
| 3:00-3:30pm | Jean-Christophe Soulie: Modeling approach enabling integrative studies from morphogenesis regulation | ||
| 3:30-4:00pm | Rachel Leander: Formal modeling coupling using DEVS | ||
| 4:00-4:30pm | Nathan Miller: A Data Model of Root Gravitropism | ||
| 4:30-5:30pm | Report of group discussion and common discussion. Leader: Phillip Lewis and Jean-Christophe Soulie |
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| 5:30pm | Shuttle pick-up from MBI | ||
| 6:00pm | Cash Bar | ||
| 7:00pm | Banquet | ||
| Friday, October 1 | |||
| How do we advance? | |||
| 8:00am | Shuttle leaves for MBI | ||
| 8:30-9:15am | Breakfast | ||
| Chairman: Ted DeJong | |||
| 9:00-9:20am | Pablo Padilla: From genes to patterns: Mathematical models for plant development and evolution | ||
| 9:20-10:00am | Vince Gutschick: A brief review of progress and some remaining challenges in modelling plant development | ||
| 10:00-10:45am | Group discussion: How do we advance? | ||
| 10:45-11:15am | Break | ||
| 11:15-12:15pm | Discussion leaders: Hamlyn G. Jones | ||
| 12:30pm | One Shuttle back to hotel One Shuttle to Columbus Airport (CMH) |
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