2014 MBI-CAMBAM-NIMBioS Summer Graduate Program: Rhythms & Oscillations

(July 7,2014 - July 18,2014 )

Organizers


Daniel Forger
Mathematics, University of Michigan
Paul Francois
Department of Physics, McGill University

This summer school will focus on the theory, mathematical modeling and experimental study of biological rhythms. The workshop will begin with a bootcamp introducing the basic mathematical tools and techniques used in studying biological rhythms. In depth explorations of specific problems will then be presented. Students will also work in small groups on projects, which will be presented at the end of the two week workshop.

All applicants selected for the MBI Summer Graduate Program will receive lodging (single dorm room) and a campus meal card loaded with daily breakfast, lunch and dinner through their entire stay.  Also, selected applicants will receive partial reimbursement for travel expenses. There is no tuition charged to summer school participants.

Apply by March 3rd, 2014 for full consideration.



Invited Speakers

Victoria Booth
Mathematics , University of Michigan
Daniel Forger
Mathematics, University of Michigan
Paul Francois
Department of Physics, McGill University
Marty Golubitsky
Mathematical Biosciences Institute, The Ohio State University
Fred Guichard
Department of Biology, McGill University
Nancy Kopell
Department of Mathematics and Statistics, Boston University
David Paydarfar
Wyss Institute, University of Massachusetts
William Schwartz
Medical School, University of Massachusetts
Arthur Sherman
National Institutes of Health
John Tyson
Computational Cell Biology, Virginia Polytechnic Institute and State University
Xiaopeng Zhao
University of Tennessee
Monday, July 7, 2014
Time Session
09:00 AM
10:00 AM

Introductions to the Summer school

10:00 AM
11:00 AM

Lecture 1: Basic principles and key questions

11:00 AM
12:00 PM

Lab 1

12:00 PM
01:00 PM

Lunch Break

01:00 PM
02:00 PM

Lecture 2: Choosing the right equations

02:00 PM
03:00 PM

Lab 2

03:00 PM
04:00 PM

Lecture 3: Simulation and model reduction

04:00 PM
05:00 PM

Lab 3

Tuesday, July 8, 2014
Time Session
09:00 AM
10:00 AM

Lecture 4: Fitting to data

10:00 AM
11:00 AM

Lab 4

11:00 AM
12:00 PM

Lecture 5: Oscillations from feedback loops

12:00 PM
01:00 PM

Lunch Break

01:00 PM
02:00 PM

Lab 5

02:00 PM
03:00 PM

Lecture 6: Noise, temperature and environmental changes

03:00 PM
04:00 PM

Lab 6

04:00 PM
05:00 PM

Lecture 7: Phase response curves

Wednesday, July 9, 2014
Time Session
09:00 AM
10:00 AM

Lab 7

10:00 AM
11:00 AM

Lecture 8: Bifurcations and clock classification

11:00 AM
12:00 PM

Lab 8

12:00 PM
01:00 PM

Lunch Break

01:00 PM
02:00 PM

Lecture 9: Optimality

02:00 PM
03:00 PM

Lab 9

03:00 PM
04:00 PM

Lecture 10: Synchrony and Entrainment

04:00 PM
05:00 PM

Lab 10

Thursday, July 10, 2014
Time Session
08:45 AM
09:00 AM

Welcome and Introduction - Marty Golubitsky

09:00 AM
10:30 AM

Lecture: Nancy Kopell - Neuronal Rhythms

10:30 AM
10:45 AM

Break

10:45 AM
11:15 AM

Discussion

11:15 AM
12:15 PM

Computer Lab/Practical Work

12:15 PM
01:30 PM

Lunch Break

01:30 PM
03:00 PM

Lecture: Marty Golubitsky - Synchrony and Symmetry

03:30 PM
03:45 PM

Break

03:45 PM
04:15 PM

Discussion

04:15 PM
05:00 PM

Computer Lab/Practical Work

Friday, July 11, 2014
Time Session
09:00 AM
10:30 AM

Lecture: William Schwartz - Circadian Rhythms

10:30 AM
10:45 AM

Break

10:45 AM
11:15 AM

Discussion

11:15 AM
12:15 PM

Computer Lab/Practical Work

12:15 PM
01:30 PM

Lunch Break

01:30 PM
03:00 PM

Lecture: David Paydarfar - Respiratory Oscillations

03:30 PM
03:45 PM

Break

03:45 PM
04:15 PM

Discussion

04:15 PM
05:00 PM

Computer Lab/Practical Work

Saturday, July 12, 2014
Time Session
Sunday, July 13, 2014
Time Session
Monday, July 14, 2014
Time Session
09:00 AM
10:30 AM

Lecture: John Tyson - Cell Cycle

10:30 AM
10:45 AM

Break

10:45 AM
11:15 AM

Discussion

11:15 AM
12:15 PM

Computer Lab/Practical Work

12:15 PM
01:30 PM

Lunch Break

01:30 PM
03:00 PM

Lecture: Paul Francois - Rhythms in Embryogenesis

03:30 PM
03:45 PM

Break

03:45 PM
04:15 PM

Discussion

04:15 PM
05:00 PM

Computer Lab/Practical Work

Tuesday, July 15, 2014
Time Session
09:00 AM
10:30 AM

Lecture: Arthur Sherman - Glycolytic and Metabolic Ocillations

10:30 AM
10:45 AM

Break

10:45 AM
11:15 AM

Discussion

11:15 AM
12:15 PM

Computer Lab/Practical Work

12:15 PM
01:30 PM

Lunch Break

01:30 PM
03:00 PM

Lecture: Victoria Booth - Rhythms in Sleep

03:30 PM
03:45 PM

Break

03:45 PM
04:15 PM

Discussion

04:15 PM
05:00 PM

Computer Lab/Practical Work

Wednesday, July 16, 2014
Time Session
09:00 AM
10:30 AM

Lecture: Fred Guichard - Ecological Rhythms

10:30 AM
10:45 AM

Break

10:45 AM
11:15 AM

Discussion

11:15 AM
12:15 PM

Computer Lab/Practical Work

12:15 PM
01:30 PM

Lunch Break

01:30 PM
03:00 PM

Lecture: Xiaopeng Zhao - Cardiac Rhythms

03:30 PM
03:45 PM

Break

03:45 PM
04:15 PM

Discussion

04:15 PM
05:00 PM

Computer Lab/Practical Work

Thursday, July 17, 2014
Time Session
09:00 AM
05:00 PM

PROJECT WORK

Friday, July 18, 2014
Time Session
09:00 AM
05:00 PM

PROJECT PRESENTATIONS

Name Email Affiliation
Baek, Mokryun baekmn@mail.uc.edu Systems biology and Physiology, College of Medicine, University of Cincinnati
Beckman, Erin ebeckman@math.duke.edu Mathematics, Duke University
Bellman, Jacob bellmajb@mail.uc.edu Department of Mathematical Sciences, University of Cincinnati
Blum, Ian ian.blum@mail.mcgill.ca Integrated Program in Neuroscience, McGill University
Booth, Victoria vbooth@med.umich.edu Mathematics , University of Michigan
Botesteanu, Dana dboteste@math.umd.edu Center for Scientific Computation and Mathematical Modeling, University of Maryland
Braun, Wilhelm wilhbr@googlemail.com School of Mathematical Sciences, Centre for Mathematical Medicine and Biology, The University of Nottingham
Burton, Danielle dburton3@utk.edu Mathematics, Program for Excellence and Equity in Research
Coulibaly, Zana czana1@umbc.edu Mathematics and Statistics, University of Maryland Baltimore County
DeWoskin, Daniel dewoskin@umich.edu Mathematics, University of Michigan
Fischer, Dorothee dorothee.fischer@med.uni-muenchen.de Faculty of Medicine, Institute for Medical Psychology
Forger, Daniel forger@umich.edu Mathematics, University of Michigan
Francois, Paul paulf@physics.mcgill.ca Department of Physics, McGill University
Gelastopoulos, Alexandros alexgelas@hotmail.com Mathematics, Boston University
Golubitsky, Marty mg@mbi.osu.edu Mathematical Biosciences Institute, The Ohio State University
Gong, Xue xg345709@ohio.edu Mathematics, Ohio University
Gudmand-Høyer, Johanne joguho@ruc.dk Department of Science, Systems and Models, Roskilde University
Guichard, Fred fred.guichard@mcgill.ca Department of Biology, McGill University
Hannay, Kevin khannay@umich.edu Mathematics, University of Michigan
Heberling, Tamra heberling.t@gmail.com Department of Mathematical Sciences, Montana State University
Heines, Elizabeth eheines@utk.edu Mathematics, University of Tennessee
Ho, Nguyenho nho@wpi.edu Mathematical Science, Worcester Polytechnic Institute
Hopwood, Thomas thomas.hopwood@postgrad.manchester.ac.uk Faculty of life sciences, University of Manchester
Jaramillo, Jorge jojaram6@yahoo.com Theoretical Biology, Humboldt Universität zu Berlin
Jiang, Shanshan jiang.smallq@gmail.com Mathematics, Tulane University
Karamchandani, Avinash avijka@u.northwestern.edu Engineering Sciences and Applied Mathematics, Northwestern University
Karatayev, Vadim vak32@cornell.edu Ecology, University of California, Davis
Khan, Emel ek66@njit.edu Mathematical sciences, New jersey Institute of Technology
Kopell, Nancy nk@bu.edu Department of Mathematics and Statistics, Boston University
Lannoo, Bruno brunolannoo@gmail.com Departement Natuurkunde en Sterrenkunde, KU Leuven
Leiser, Randolph rjl22@njit.edu Mathematics, New Jersey Institute of Technology
Li, Xinxuan xl1@umbc.edu Department of Mathematics and Statistics, University of Maryland Baltimore County
Liu, Shang Wan shalon.liu@mail.mcgill.ca Mathematics and Statistics, McGill University
Massarelli, Nicole massa2@umbc.edu Applied Mathematics and Statistics, University of Maryland Baltimore County
Mata, May Anne mayang@alumni.ubc.ca Unit 5, Mathematics, Physics, Computer Science and Statistics, University of British Columbia
McGee, Reginald mcgee3@purdue.edu Mathematics, Purdue University
Mitre, Tina tina.mitre@gmail.com Mathematics, McGill University
Moran, Spencer spencer.moran@mail.mcgill.ca Centre for Non-Linear Dynamics in Physiology, McGill University
Onal, Birce onal.1@osu.edu Department of Biomedical Engineering, The Ohio State University
Paydarfar, David David.Paydarfar@umassmed.edu Wyss Institute, University of Massachusetts
Schwartz, William William.Schwartz@umassmed.edu Medical School, University of Massachusetts
Sherman, Arthur asherman@nih.gov National Institutes of Health
Shutt, Deborah dshutt@mines.edu Applied Mathematics and Statistics, Colorado School of Mines
Siewe, Nourridine nourridine@aims.ac.za Mathematics, Howard University
Tian, Fangyun fangyun@umich.edu Molecular and Integrative Physiology, University of Michigan
Tyson, John tyson@vt.edu Computational Cell Biology, Virginia Polytechnic Institute and State University
Wesolowski, Sergiusz sjw12@my.fsu.edu Mathematics, Florida State University
Woller, Aurore apolaire@gmail.com Laboratoire de Physique des Lasers, Atomes, Molécules, Université des Sciences et Technologies de Lille
Yan, Yi yihengyan@gmail.com IOB, UGA
Zhang, Jie jzhang34@student.gsu.edu Mathematics and Statistics, Georgia State University
Zhao, Xiaopeng xzhao9@utk.edu University of Tennessee
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Lecture 10: Synchrony and Entrainment
Lecture 10: Synchrony and Entrainment

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Lecture 9: Optimality
Lecture 9: Optimality

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Lecture 8: Bifurcations and clock classification
Lecture 8: Bifurcations and clock classification

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Lecture 7: Phase response curves
Lecture 7: Phase response curves

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Lecture 6: Noise, temperature and environmental changes
Lecture 6: Noise, temperature and environmental changes

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Lecture 5: Oscillations from feedback loops
Lecture 5: Oscillations from feedback loops

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Lecture 4: Fitting to data
Lecture 4: Fitting to data

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Lecture 3: Simulation and model reduction
Lecture 3: Simulation and model reduction

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Lecture 2: Choosing the right equations
Lecture 2: Choosing the right equations

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Lecture 1: Basic principles and key questions
Lecture 1: Basic principles and key questions

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Lecture: Victoria Booth - Rhythms in Sleep
Lecture: Victoria Booth - Rhythms in Sleep

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Lecture: Arthur Sherman - Glycolytic and Metabolic Ocillations
Lecture: Arthur Sherman - Glycolytic and Metabolic Ocillations

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Lecture: Fred Guichard - Ecological Rhythms
Lecture: Fred Guichard - Ecological Rhythms